# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_unc-130/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/unc-130.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/unc-130.fasta (Sat Feb 12 16:15:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.275 C 0.212 G 0.215 T 0.297


MOTIF AAAGGCGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAGGCGC   GCGCCTTT          9          0   1.8e-003   4.9e+000
#         AAAGGCGC   GCGCCTTT          9          0   1.8e-003   4.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.9e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGAGACCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGAGACCC   GGGTCTCG          7          0   7.5e-003   2.0e+001
#         CGAGACCC   GGGTCTCG          7          0   7.5e-003   2.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.0e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTACAGTA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTACAGTA   TACTGTAG          7          0   7.5e-003   2.0e+001
#         CTACAGTA   TACTGTAG          7          0   7.5e-003   2.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.0e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCGTACCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGTACCC   GGGTACGG          5          0   3.1e-002   7.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.9e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACCGTAGT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCGTAGT   ACTACGGT          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 0.72 seconds