# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_tbx-9/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/tbx-9.fasta
#   positives: 84 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/tbx-9.fasta (Sat Feb 12 16:15:52 EST 2022)
#   negatives: 84 from shuffled positives
#        host: c27n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:59 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.284 C 0.205 G 0.201 T 0.310


MOTIF AAAAAATC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAATC   GATTTTTT          2          0   2.5e-001   2.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAAGTGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGTGC   GCACTTTT          2          0   2.5e-001   2.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAATTAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATTAT   ATAATTTT          2          0   2.5e-001   2.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAAGCTGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAGCTGC   GCAGCTTT          2          0   2.5e-001   2.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAATAGAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATAGAC   GTCTATTT          2          0   2.5e-001   2.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.4e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.31 seconds