# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_tbx-7/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/tbx-7.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/tbx-7.fasta (Sat Feb 12 16:15:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.247 C 0.253 G 0.241 T 0.259


MOTIF GGCCKAGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGCCKAGA   TCTMGGCC         24          1   4.5e-007   1.2e-003
#         GGCCTAGA   TCTAGGCC         17          1   5.6e-005   1.4e-001
#         GGCCGAGA   TCTCGGCC          7          0   7.5e-003   1.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.2e-003
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.291667 0.708333
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTGGCCTA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTGGCCTA   TAGGCCAC          8          0   3.7e-003   9.2e+000
#         GTGGCCTA   TAGGCCAC          8          0   3.7e-003   9.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 9.2e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAGGGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGGGG   CCCCTTTT          7          0   7.5e-003   1.8e+001
#         AAAAGGGG   CCCCTTTT          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CGGCCACC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGGCCACC   GGTGGCCG          6          0   1.5e-002   3.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.7e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GAGTACAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAGTACAC   GTGTACTC          6          0   1.5e-002   3.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.7e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.66 seconds