# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_tbp1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/tbp1.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/tbp1.fasta (Sat Feb 12 16:15:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.242 C 0.251 G 0.253 T 0.253


MOTIF CTGMGCCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGMGCCA   TGGCKCAG         28          0   1.7e-009   4.2e-006
#         CTGAGCCA   TGGCTCAG         15          0   2.5e-005   6.2e-002
#         CTGCGCCA   TGGCGCAG         13          0   1.0e-004   2.6e-001

letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 4.2e-006
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.535714 0.464286 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATGGCCGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGGCCGA   TCGGCCAT         11          0   4.4e-004   1.0e+000
#         ATGGCCGA   TCGGCCAT         11          0   4.4e-004   1.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.0e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GCGGGAGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCGGGAGA   TCTCCCGC          8          0   3.7e-003   8.7e+000
#         GCGGGAGA   TCTCCCGC          8          0   3.7e-003   8.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.7e+000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGGCTCAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGGCTCAA   TTGAGCCA          8          0   3.7e-003   8.6e+000
#         TGGCTCAA   TTGAGCCA          8          0   3.7e-003   8.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.6e+000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAATGTG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATGTG   CACATTTT          8          1   1.9e-002   4.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.76 seconds