# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_sptf-1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/sptf-1.fasta
#   positives: 9 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/sptf-1.fasta (Sat Feb 12 16:15:52 EST 2022)
#   negatives: 9 from shuffled positives
#        host: c22n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.413 C 0.207 G 0.163 T 0.217


MOTIF AAAAAACA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAACA   TGTTTTTT          2          0   2.4e-001   2.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.7e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAACTCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACTCA   TGAGTTTT          1          0   5.0e-001   4.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 4.8e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAATCGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATCGC   GCGATTTT          1          0   5.0e-001   4.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 4.4e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAATTTC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATTTC   GAAATTTT          1          0   5.0e-001   3.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 3.9e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAACAGCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACAGCC   GGCTGTTT          1          0   5.0e-001   3.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 3.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.11 seconds