# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_sma-9/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/sma-9.fasta
#   positives: 62 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/sma-9.fasta (Sat Feb 12 16:15:51 EST 2022)
#   negatives: 62 from shuffled positives
#        host: c22n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.285 C 0.232 G 0.224 T 0.259


MOTIF AAAATAGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATAGA   TCTATTTT          2          0   2.5e-001   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGAAGAT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGAAGAT   ATCTTCTT          2          0   2.5e-001   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAGAGACG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGAGACG   CGTCTCTT          2          0   2.5e-001   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAGATGCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGATGCC   GGCATCTT          2          0   2.5e-001   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACACACAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACACAA   TTGTGTGT          2          0   2.5e-001   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.25 seconds