# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_sem-4/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/sem-4.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/sem-4.fasta (Sat Feb 12 16:15:51 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.291 C 0.210 G 0.204 T 0.295


MOTIF AAAAAAAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAAAA   TTTTTTTT         10          3   4.4e-002   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAAGAAGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAGAAGA   TCTTCTTC          5          1   1.1e-001   3.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 3.0e+002
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAACGAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACGAG   CTCGTTTT          3          0   1.2e-001   3.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.4e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAAGATG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGATG   CATCTTTT          3          0   1.2e-001   3.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.4e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAATTAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATTAA   TTAATTTT          3          0   1.2e-001   3.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.98 seconds