# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_sdz-38/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/sdz-38.fasta
#   positives: 51 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/sdz-38.fasta (Sat Feb 12 16:15:51 EST 2022)
#   negatives: 51 from shuffled positives
#        host: c27n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:21:02 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.308 C 0.173 G 0.194 T 0.325


MOTIF AAAACGAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACGAA   TTCGTTTT          2          0   2.5e-001   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAGCCTT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAGCCTT   AAGGCTTT          2          0   2.5e-001   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAATCAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATCAAA   TTTGATTT          2          0   2.5e-001   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGTGTTTA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTGTTTA   TAAACACT          2          0   2.5e-001   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCAACTTC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAACTTC   GAAGTTGG          2          0   2.5e-001   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.22 seconds