# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_pha-4/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/pha-4.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/pha-4.fasta (Sat Feb 12 16:15:51 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:11 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.267 C 0.241 G 0.221 T 0.272


MOTIF AGACGCAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGACGCAG   CTGCGTCT          5          0   3.1e-002   8.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CTCTCTCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCTCTCC   GGAGAGAG          5          0   3.1e-002   8.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.7e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AATATTTG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATATTTG   CAAATATT          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CTGTTTAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGTTTAC   GTAAACAG          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAACAAAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACAAAA   TTTTGTTT          3          0   1.2e-001   3.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.4e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.70 seconds