# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_peb-1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/peb-1.fasta
#   positives: 80 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/peb-1.fasta (Sat Feb 12 16:15:51 EST 2022)
#   negatives: 80 from shuffled positives
#        host: c27n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:59 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.238 C 0.262 G 0.260 T 0.239


MOTIF AAAAACAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAACAG   CTGTTTTT          2          0   2.5e-001   2.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAGAGAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAGAGAA   TTCTCTTT          2          0   2.5e-001   2.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACGCGGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACGCGGC   GCCGCGTT          2          0   2.5e-001   2.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.4e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAGCGGTG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGCGGTG   CACCGCTT          2          0   2.5e-001   2.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.4e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AATAGGGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATAGGGA   TCCCTATT          2          0   2.5e-001   2.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.28 seconds