# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_nhr-84/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/nhr-84.fasta
#   positives: 53 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/nhr-84.fasta (Sat Feb 12 16:15:51 EST 2022)
#   negatives: 53 from shuffled positives
#        host: c27n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:21:01 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.273 C 0.220 G 0.230 T 0.277


MOTIF AAAACTCT DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACTCT   AGAGTTTT          2          0   2.5e-001   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAAGAAAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAGAAAC   GTTTCTTT          2          0   2.5e-001   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAATAATA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATAATA   TATTATTT          2          0   2.5e-001   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATATTAT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATATTAT   ATAATATT          2          0   2.5e-001   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ACACACAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACACAC   GTGTGTGT          2          0   2.5e-001   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.22 seconds