# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_nhr-12/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/nhr-12.fasta
#   positives: 82 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/nhr-12.fasta (Sat Feb 12 16:15:50 EST 2022)
#   negatives: 82 from shuffled positives
#        host: c22n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:11 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.263 C 0.211 G 0.185 T 0.341


MOTIF AATAAATA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATAAATA   TATTTATT          3          0   1.2e-001   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATGAAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATGAAAA   TTTTCATT          3          0   1.2e-001   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGCCAGCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCCAGCA   TGCTGGCG          3          0   1.2e-001   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.2e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAAGAGAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAGAGAC   GTCTCTTC          3          0   1.2e-001   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.1e+002
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAAATGG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAATGG   CCATTTTT          2          0   2.5e-001   2.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.30 seconds