# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_nfya-1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/nfya-1.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/nfya-1.fasta (Sat Feb 12 16:15:50 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.223 C 0.264 G 0.287 T 0.226


MOTIF CYCCGCCC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CYCCGCCC   GGGCGGRG         61          1   2.4e-019   3.8e-016
#         CTCCGCCC   GGGCGGAG         52          1   3.4e-016   5.4e-013
#         CCCCGCCC   GGGCGGGG          9          0   1.8e-003   2.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 3.8e-016
0.000000 1.000000 0.000000 0.000000
0.000000 0.147541 0.000000 0.852459
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCAATCAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAATCAG   CTGATTGG         54          1   7.0e-017   1.0e-013
#         CCAATCAG   CTGATTGG         54          1   7.0e-017   1.0e-013

letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.0e-013
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAGTGGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAGTGGG   CCCACTTT         19          0   1.3e-006   1.8e-003
#         AAAGTGGG   CCCACTTT         19          0   1.3e-006   1.8e-003

letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 1.8e-003
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CGAWTCGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGAWTCGC   GCGAWTCG         16          0   1.2e-005   1.5e-002
#         CGAATCGC   GCGATTCG         12          0   2.1e-004   2.7e-001
#         CGATTCGC   GCGAATCG          8          0   3.7e-003   4.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.5e-002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.625000 0.000000 0.000000 0.375000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCACGCCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCACGCCC   GGGCGTGG         17          1   5.6e-005   7.0e-002
#         CCACGCCC   GGGCGTGG         17          1   5.6e-005   7.0e-002

letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 7.0e-002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.67 seconds