# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_mml-1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/mml-1.fasta
#   positives: 97 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/mml-1.fasta (Sat Feb 12 16:15:50 EST 2022)
#   negatives: 97 from shuffled positives
#        host: c27n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:21:05 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.253 C 0.240 G 0.229 T 0.278


MOTIF CACGTGAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACGTGAA   TTCACGTG         15          0   1.7e-005   1.9e-002
#         CACGTGAA   TTCACGTG         15          0   1.7e-005   1.9e-002

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.9e-002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CACGTGCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACGTGCA   TGCACGTG          5          0   3.0e-002   3.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 3.0e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CATGTGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATGTGAA   TTCACATG          4          0   6.1e-002   5.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 5.9e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATGATGAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGATGAA   TTCATCAT          3          0   1.2e-001   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.2e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAACACG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACACG   CGTGTTTT          2          0   2.5e-001   2.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.36 seconds