# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_lsl-1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/lsl-1.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/lsl-1.fasta (Sat Feb 12 16:15:50 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.291 C 0.198 G 0.204 T 0.306


MOTIF CTACNGTA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTACNGTA   TACNGTAG         34          0   1.7e-011   4.3e-008
#         CTACAGTA   TACTGTAG         19          0   1.3e-006   3.3e-003
#         CTACCGTA   TACGGTAG         10          0   8.9e-004   2.2e+000
#         CTACGGTA   TACCGTAG          9          0   1.8e-003   4.4e+000
#         CTACTGTA   TACAGTAG          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 4.3e-008
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.428571 0.200000 0.200000 0.171429
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TTTAAAGR DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TTTAAAGR   YCTTTAAA         14          0   5.1e-005   1.1e-001
#         TTTAAAGA   TCTTTAAA         10          0   8.9e-004   2.0e+000
#         TTTAAAGG   CCTTTAAA          9          0   1.8e-003   4.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.1e-001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.714286 0.000000 0.285714 0.000000


MOTIF AGTACGCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTACGCA   TGCGTACT         12          0   2.1e-004   4.8e-001
#         AGTACGCA   TGCGTACT         12          0   2.1e-004   4.8e-001

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 4.8e-001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATCGAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATCGAC   GTCGATTT          6          0   1.5e-002   3.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACAAAAAT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAAAAAT   ATTTTTGT          5          0   3.1e-002   6.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.6e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 0.88 seconds