# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_lin-15B/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/lin-15B.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/lin-15B.fasta (Sat Feb 12 16:15:49 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:21:04 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.251 C 0.237 G 0.263 T 0.249


MOTIF CGCGCTCY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCGCTCY   RGAGCGCG         20          1   7.3e-006   2.0e-002
#         CGCGCTCC   GGAGCGCG         13          1   8.0e-004   2.1e+000
#         CGCGCTCT   AGAGCGCG          7          0   7.5e-003   2.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 2.0e-002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.650000 0.000000 0.350000


MOTIF GGAGCGCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGAGCGCA   TGCGCTCC          7          0   7.5e-003   1.9e+001
#         GGAGCGCA   TGCGCTCC          7          0   7.5e-003   1.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.9e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACACGCGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACGCGC   GCGCGTGT          5          0   3.1e-002   7.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CAAGCGCG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAAGCGCG   CGCGCTTG          5          0   3.1e-002   7.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.7e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GCAAGTGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCAAGTGC   GCACTTGC          5          0   3.1e-002   7.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.7e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.87 seconds