# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_let-607/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/let-607.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/let-607.fasta (Sat Feb 12 16:15:49 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.293 C 0.205 G 0.216 T 0.286


MOTIF GACGTGGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GACGTGGC   GCCACGTC          7          0   7.5e-003   2.2e+001
#         GACGTGGC   GCCACGTC          7          0   7.5e-003   2.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.2e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACTGATAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTGATAA   TTATCAGT          6          0   1.5e-002   4.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACGTGGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGTGGAA   TTCCACGT          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTTCCAAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTCCAAC   GTTGGAAG          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAATGTC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATGTC   GACATTTT          3          0   1.2e-001   3.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.4e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.87 seconds