# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_hlh-17/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/hlh-17.fasta
#   positives: 57 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/hlh-17.fasta (Sat Feb 12 16:15:49 EST 2022)
#   negatives: 57 from shuffled positives
#        host: c22n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:11 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.260 C 0.225 G 0.223 T 0.292


MOTIF AAAAAGTT DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAGTT   AACTTTTT          3          0   1.2e-001   8.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 8.6e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AATATTAT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATATTAT   ATAATATT          2          0   2.5e-001   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AATTAACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATTAACA   TGTTAATT          2          0   2.5e-001   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGTCAAGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTCAAGA   TCTTGACC          2          0   2.5e-001   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.6e+002
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAAAAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAAAG   CTTTTTTT          1          0   5.0e-001   3.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 3.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.24 seconds