# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_hlh-12/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/hlh-12.fasta
#   positives: 122 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/hlh-12.fasta (Sat Feb 12 16:15:49 EST 2022)
#   negatives: 122 from shuffled positives
#        host: c17n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.277 C 0.214 G 0.230 T 0.280


MOTIF CTGAGCTA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGAGCTA   TAGCTCAG          6          0   1.5e-002   2.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 2.1e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGGATTCG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGATTCG   CGAATCCT          5          0   3.0e-002   4.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 4.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAAAATG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAATG   CATTTTTT          3          0   1.2e-001   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACCACGGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCACGGC   GCCGTGGT          3          0   1.2e-001   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTCTGCCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCTGCCA   TGGCAGAG          3          0   1.2e-001   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.6e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.72 seconds