# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_fkh-2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/fkh-2.fasta
#   positives: 101 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/fkh-2.fasta (Sat Feb 12 16:15:48 EST 2022)
#   negatives: 101 from shuffled positives
#        host: c27n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:21:04 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.281 C 0.233 G 0.224 T 0.262


MOTIF GTGAGAGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTGAGAGA   TCTCTCAC          4          0   6.1e-002   7.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 7.6e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAACAAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACAAAA   TTTTGTTT          3          0   1.2e-001   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGAAGAAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAAGAAG   CTTCTTCT          3          0   1.2e-001   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAATACAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATACAC   GTGTATTT          2          0   2.5e-001   2.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAATCTCT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATCTCT   AGAGATTT          2          0   2.5e-001   2.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 0.41 seconds