# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_elt-1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/elt-1.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/elt-1.fasta (Sat Feb 12 16:15:48 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.318 C 0.176 G 0.199 T 0.307


MOTIF AAAATCTC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATCTC   GAGATTTT          6          0   1.5e-002   4.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.2e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAAGATA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGATA   TATCTTTT          8          1   1.9e-002   5.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 5.1e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATAACATC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATAACATC   GATGTTAT          5          0   3.1e-002   8.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TCTTATCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCTTATCA   TGATAAGA          5          0   3.1e-002   8.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.1e+001
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAAGAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAGAA   TTCTTTTT          7          1   3.4e-002   9.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 9.0e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.87 seconds