# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_ceh-9/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/ceh-9.fasta
#   positives: 22 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/ceh-9.fasta (Sat Feb 12 16:15:47 EST 2022)
#   negatives: 22 from shuffled positives
#        host: c27n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.259 C 0.297 G 0.200 T 0.243


MOTIF ATGTCGAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGTCGAG   CTCGACAT          2          0   2.4e-001   6.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAACGAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACGAC   GTCGTTTT          1          0   5.0e-001   1.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 1.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAAGCAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGCAA   TTGCTTTT          1          0   5.0e-001   1.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 1.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAGTGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGTGC   GCACTTTT          1          0   5.0e-001   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 1.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAACACGG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACACGG   CCGTGTTT          1          0   5.0e-001   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 1.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.30 seconds