# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_ceh-62/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/ceh-62.fasta
#   positives: 25 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/ceh-62.fasta (Sat Feb 12 16:15:47 EST 2022)
#   negatives: 25 from shuffled positives
#        host: c23n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.335 C 0.091 G 0.127 T 0.446


MOTIF AAACAATA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACAATA   TATTGTTT          2          0   2.4e-001   7.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 7.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATAATAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATAATAAA   TTTATTAT          2          0   2.4e-001   6.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTATTTC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTATTTC   GAAATAAT          2          0   2.4e-001   6.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.6e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATTTTTTG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTTTTG   CAAAAAAT          2          0   2.4e-001   6.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAAATAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAATAA   TTATTTTT          1          0   5.0e-001   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 1.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.18 seconds