# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_ceh-48/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/ceh-48.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/ceh-48.fasta (Sat Feb 12 16:15:47 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.338 C 0.166 G 0.159 T 0.338


MOTIF AAATCRAT DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATCRAT   ATYGATTT         90          3   1.3e-027   2.5e-024
#         AAATCGAT   ATCGATTT         62          2   1.9e-018   3.8e-015
#         AAATCAAT   ATTGATTT         28          1   2.6e-008   5.2e-005

letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 2.5e-024
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.311111 0.000000 0.688889 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF GAAAAATC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAAAATC   GATTTTTC         12          1   1.5e-003   2.7e+000
#         GAAAAATC   GATTTTTC         12          1   1.5e-003   2.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.7e+000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AATTATCG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATTATCG   CGATAATT          9          0   1.8e-003   3.2e+000
#         AATTATCG   CGATAATT          9          0   1.8e-003   3.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 3.2e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AATCAATA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATCAATA   TATTGATT          7          0   7.5e-003   1.3e+001
#         AATCAATA   TATTGATT          7          0   7.5e-003   1.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATAATTTC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATAATTTC   GAAATTAT          6          1   6.1e-002   1.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.0e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.65 seconds