# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_ceh-36/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/ceh-36.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/ceh-36.fasta (Sat Feb 12 16:15:47 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:21:01 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.268 C 0.237 G 0.227 T 0.268


MOTIF AGGMTTAR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGMTTAR   YTAAKCCT        133         13   1.8e-035   2.4e-032
#         AGGCTTAG   CTAAGCCT        100         11   7.9e-024   1.0e-020
#         AGGATTAG   CTAATCCT         16          0   1.2e-005   1.5e-002
#         AGGCTTAA   TTAAGCCT         19          2   8.3e-005   1.1e-001
#         AGGATTAA   TTAATCCT          7          0   7.5e-003   9.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 137 E= 2.4e-032
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.160584 0.839416 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.167883 0.000000 0.832117 0.000000


MOTIF AGCCTRAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCCTRAG   CTYAGGCT         40          7   1.6e-007   1.8e-004
#         AGCCTAAG   CTTAGGCT         34          7   5.8e-006   6.4e-003
#         AGCCTGAG   CTCAGGCT          9          0   1.8e-003   2.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 1.8e-004
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.809524 0.000000 0.190476 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GCTTAAGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCTTAAGC   GCTTAAGC          9          0   1.8e-003   1.8e+000
#         GCTTAAGC   GCTTAAGC          9          0   1.8e-003   1.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.8e+000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TAAACCTA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAACCTA   TAGGTTTA          8          0   3.7e-003   3.7e+000
#         TAAACCTA   TAGGTTTA          8          0   3.7e-003   3.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 3.7e+000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GCATAGGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCATAGGC   GCCTATGC          6          0   1.5e-002   1.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.5e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.57 seconds