# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_ceh-28/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/ceh-28.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/ceh-28.fasta (Sat Feb 12 16:15:47 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:11 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.369 C 0.126 G 0.125 T 0.380


MOTIF AATCRATA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATCRATA   TATYGATT         90          5   2.2e-025   3.8e-022
#         AATCGATA   TATCGATT         48          3   1.1e-012   1.9e-009
#         AATCAATA   TATTGATT         44          2   2.3e-012   4.1e-009

letter-probability matrix: alength= 4 w= 8 nsites= 94 E= 3.8e-022
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.489362 0.000000 0.510638 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAAAAATC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAAAATC   GATTTTTC         16          3   1.9e-003   3.0e+000
#         GAAAAATC   GATTTTTC         16          3   1.9e-003   3.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 3.0e+000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAATCAAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATCAAT   ATTGATTT          7          0   7.5e-003   1.2e+001
#         AAATCAAT   ATTGATTT          7          0   7.5e-003   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.2e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AATTATCG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATTATCG   CGATAATT          7          0   7.5e-003   1.2e+001
#         AATTATCG   CGATAATT          7          0   7.5e-003   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.2e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATTTTTTG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTTTTG   CAAAAAAT          6          1   6.1e-002   9.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.63 seconds