# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_cebp-1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/cebp-1.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/cebp-1.fasta (Sat Feb 12 16:15:47 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.303 C 0.178 G 0.185 T 0.335


MOTIF RTTGCGAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RTTGCGAA   TTCGCAAY         41          0   7.6e-014   1.9e-010
#         ATTGCGAA   TTCGCAAT         31          0   1.7e-010   4.4e-007
#         GTTGCGAA   TTCGCAAC         10          0   8.9e-004   2.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 1.9e-010
0.756098 0.000000 0.243902 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTTCGCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTCGCA   TGCGAAAT          9          1   1.0e-002   2.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATCGAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATCGAT   ATCGATTT          5          0   3.1e-002   7.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.2e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ATTTCGAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTCGAA   TTCGAAAT          7          1   3.4e-002   7.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 7.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAAAAAAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAAAAAA   TTTTTTTC          6          1   6.1e-002   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.4e+002
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.68 seconds