# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_ccch-3/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/ccch-3.fasta
#   positives: 109 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/ccch-3.fasta (Sat Feb 12 16:15:47 EST 2022)
#   negatives: 109 from shuffled positives
#        host: c22n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:11 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.285 C 0.222 G 0.222 T 0.272


MOTIF AGGAGTAC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGAGTAC   GTACTCCT          5          0   3.0e-002   3.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 3.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GCCTAGAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCTAGAA   TTCTAGGC          4          0   6.1e-002   7.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 7.8e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACGGCCGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGGCCGA   TCGGCCGT          3          0   1.2e-001   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGGCCACG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGCCACG   CGTGGCCT          3          0   1.2e-001   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAAATAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAATAG   CTATTTTT          2          0   2.5e-001   3.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.0e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.41 seconds