# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_attf-4/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/attf-4.fasta
#   positives: 86 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/attf-4.fasta (Sat Feb 12 16:15:46 EST 2022)
#   negatives: 86 from shuffled positives
#        host: c27n08.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.300 C 0.177 G 0.221 T 0.302


MOTIF AGAAGAGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAAGAGA   TCTCTTCT          3          0   1.2e-001   1.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.3e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TAAAAATA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAAAATA   TATTTTTA          3          0   1.2e-001   1.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.3e+002
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAACCCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACCCA   TGGGTTTT          2          0   2.5e-001   2.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATACAT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATACAT   ATGTATTT          2          0   2.5e-001   2.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AATATGAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATATGAA   TTCATATT          2          0   2.5e-001   2.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.4e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.53 seconds