# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_aly-2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/aly-2.fasta
#   positives: 96 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/aly-2.fasta (Sat Feb 12 16:15:46 EST 2022)
#   negatives: 96 from shuffled positives
#        host: c23n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.287 C 0.213 G 0.205 T 0.295


MOTIF AAAATCTG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATCTG   CAGATTTT          3          0   1.2e-001   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAACATT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACATT   AATGTTTT          2          0   2.5e-001   2.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAAAGGGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGGGG   CCCCTTTT          2          0   2.5e-001   2.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAATGTT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATGTT   AACATTTT          2          0   2.5e-001   2.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AACAGATC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAGATC   GATCTGTT          2          0   2.5e-001   2.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.8e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.37 seconds