# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_alr-1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/alr-1.fasta
#   positives: 51 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/alr-1.fasta (Sat Feb 12 16:15:46 EST 2022)
#   negatives: 51 from shuffled positives
#        host: c23n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:53 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.243 C 0.270 G 0.210 T 0.277


MOTIF AGACGCAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGACGCAG   CTGCGTCT          4          0   5.9e-002   3.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AACGACGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACGACGA   TCGTCGTT          2          0   2.5e-001   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACAACTAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAACTAG   CTAGTTGT          2          0   2.5e-001   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACACACAT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACACAT   ATGTGTGT          2          0   2.5e-001   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF CACGCGGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACGCGGA   TCCGCGTG          2          0   2.5e-001   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.21 seconds