# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_Y116A8C.19/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/Y116A8C.19.fasta
#   positives: 99 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/Y116A8C.19.fasta (Sat Feb 12 16:15:52 EST 2022)
#   negatives: 99 from shuffled positives
#        host: c27n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:21:02 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.235 C 0.254 G 0.280 T 0.231


MOTIF GCCGTGTA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCGTGTA   TACACGGC         10          0   7.7e-004   7.9e-001
#         GCCGTGTA   TACACGGC         10          0   7.7e-004   7.9e-001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 7.9e-001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTGGCCTA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTGGCCTA   TAGGCCAC         10          0   7.7e-004   7.6e-001
#         GTGGCCTA   TAGGCCAC         10          0   7.7e-004   7.6e-001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 7.6e-001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGAGAGGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGAGAGGA   TCCTCTCG          6          0   1.4e-002   1.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.4e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCTAGAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTAGAAA   TTTCTAGG          4          0   6.1e-002   5.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 5.6e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGGCCACG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGGCCACG   CGTGGCCG          4          0   6.1e-002   5.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 5.4e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.31 seconds