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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.308 C 0.192 G 0.192 T 0.308 

MOTIF 1-ACTGCACT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.2e-001
 0.992427 0.002101 0.002101 0.003371
 0.003371 0.991158 0.002101 0.003371
 0.003371 0.077956 0.002101 0.916572
 0.079225 0.002101 0.915303 0.003371
 0.155324 0.839204 0.002101 0.003371
 0.992427 0.002101 0.002101 0.003371
 0.079225 0.915303 0.002101 0.003371
 0.003371 0.154055 0.077956 0.764619

MOTIF 2-GGGTTTCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 2.4e-001
 0.001962 0.019498 0.976579 0.001962
 0.001962 0.089514 0.906563 0.001962
 0.001962 0.001223 0.994854 0.001962
 0.001962 0.001223 0.045368 0.951447
 0.001962 0.001223 0.045368 0.951447
 0.001962 0.177947 0.045368 0.774723
 0.046107 0.729125 0.001223 0.223545
 0.907160 0.001223 0.001223 0.090395

MOTIF 3-CTGTAGTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 5.0e-001
 0.003963 0.989604 0.002470 0.003963
 0.093148 0.091656 0.091656 0.723540
 0.093148 0.002470 0.900418 0.003963
 0.003963 0.002470 0.002470 0.991096
 0.991096 0.002470 0.002470 0.003963
 0.003963 0.002470 0.989604 0.003963
 0.003963 0.002470 0.002470 0.991096
 0.003963 0.989604 0.002470 0.003963

MOTIF 4-CCACCTAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.061316 0.910147 0.001626 0.026911
 0.002609 0.968854 0.001626 0.026911
 0.758744 0.119229 0.001626 0.120401
 0.002609 0.875743 0.060333 0.061316
 0.002609 0.993157 0.001626 0.002609
 0.120211 0.001626 0.001626 0.876536
 0.935432 0.001626 0.001626 0.061316
 0.002609 0.001626 0.993157 0.002609

MOTIF 5-AGATRGCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.786327 0.001443 0.001443 0.210788
 0.002314 0.001443 0.993929 0.002314
 0.994801 0.001443 0.001443 0.002314
 0.002314 0.001443 0.001443 0.994801
 0.263707 0.053519 0.524063 0.158711
 0.054391 0.001443 0.941853 0.002314
 0.002314 0.993929 0.001443 0.002314
 0.734250 0.001443 0.261993 0.002314

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZZZ3.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZZZ3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n10.farnam.hpc.yale.internal
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FINALTIME:	2.78 seconds
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