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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.273 C 0.227 G 0.227 T 0.273 

MOTIF 1-GAGAARAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 171 P= 1.8e-003
 0.000513 0.000425 0.998549 0.000513
 0.995385 0.000425 0.003677 0.000513
 0.178900 0.072212 0.743172 0.005715
 0.949047 0.000425 0.000425 0.050102
 0.671869 0.000425 0.296834 0.030872
 0.426732 0.013432 0.559324 0.000513
 0.983005 0.000425 0.000425 0.016144
 0.984727 0.003929 0.000425 0.010918

MOTIF 2-ACCCCAGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 72 P= 2.5e-001
 0.763210 0.160653 0.000525 0.075612
 0.059484 0.811033 0.035396 0.094087
 0.140179 0.667939 0.016575 0.175307
 0.145086 0.766679 0.023220 0.065015
 0.164491 0.799181 0.000525 0.035804
 0.885939 0.048676 0.064752 0.000633
 0.048836 0.016575 0.830984 0.103605
 0.032785 0.895056 0.071526 0.000633

MOTIF 3-TGACTAAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.101190 0.001620 0.051159 0.846031
 0.051492 0.001620 0.845698 0.101190
 0.895569 0.100857 0.001620 0.001953
 0.001953 0.994473 0.001620 0.001953
 0.001953 0.051159 0.001620 0.945268
 0.746474 0.001620 0.150716 0.101190
 0.945268 0.051159 0.001620 0.001953
 0.001953 0.795358 0.001620 0.201069

MOTIF 4-CAGATAAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 7.0e-001
 0.001390 0.804237 0.086689 0.107684
 0.890181 0.001153 0.001153 0.107512
 0.001390 0.001153 0.996066 0.001390
 0.936997 0.060459 0.001153 0.001390
 0.001390 0.001153 0.001153 0.996303
 0.819547 0.107275 0.001153 0.072024
 0.925669 0.001153 0.071787 0.001390
 0.143115 0.001153 0.819081 0.036651

MOTIF 5-AGATAATG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.785403 0.001706 0.053862 0.159029
 0.106536 0.053862 0.785389 0.054212
 0.837896 0.158342 0.001706 0.002056
 0.002056 0.106186 0.001706 0.890052
 0.994532 0.001706 0.001706 0.002056
 0.994532 0.001706 0.001706 0.002056
 0.002056 0.263158 0.001706 0.733080
 0.106536 0.106186 0.785222 0.002056

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZNF83.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZNF83/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n01.farnam.hpc.yale.internal
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FINALTIME:	1.65 seconds
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