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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.24 C 0.26 G 0.26 T 0.24 

MOTIF 1-AGATAAAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 7.6e-001
 0.996040 0.001356 0.001356 0.001249
 0.061975 0.037461 0.863211 0.037353
 0.959935 0.001356 0.037461 0.001249
 0.001249 0.073682 0.001356 0.923714
 0.977987 0.001356 0.019408 0.001249
 0.799870 0.001356 0.161421 0.037353
 0.732073 0.037461 0.229218 0.001249
 0.001249 0.073682 0.887659 0.037411

MOTIF 2-ATGGAGTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.994449 0.001900 0.001900 0.001750
 0.001750 0.204818 0.001900 0.791531
 0.001750 0.001900 0.994599 0.001750
 0.052357 0.027204 0.766868 0.153571
 0.994449 0.001900 0.001900 0.001750
 0.102964 0.001900 0.893385 0.001750
 0.001750 0.052507 0.001900 0.943842
 0.052357 0.813892 0.001900 0.131850

MOTIF 3-ATCTTATC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.991500 0.002910 0.002910 0.002680
 0.002680 0.002910 0.002910 0.991500
 0.157918 0.836492 0.002910 0.002680
 0.080299 0.158148 0.002910 0.758643
 0.002680 0.002910 0.002910 0.991500
 0.991500 0.002910 0.002910 0.002680
 0.002680 0.158148 0.002910 0.836262
 0.002680 0.991730 0.002910 0.002680

MOTIF 4-AAAATACA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.930882 0.023664 0.023664 0.021791
 0.930882 0.023664 0.023664 0.021791
 0.930882 0.023664 0.023664 0.021791
 0.930882 0.023664 0.023664 0.021791
 0.021791 0.023664 0.023664 0.930882
 0.930882 0.023664 0.023664 0.021791
 0.021791 0.932755 0.023664 0.021791
 0.930882 0.023664 0.023664 0.021791

MOTIF 5-AGGAGGWG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 1.0e+000
 0.996536 0.001186 0.001186 0.001092
 0.001092 0.001186 0.996630 0.001092
 0.001092 0.001186 0.996630 0.001092
 0.996536 0.001186 0.001186 0.001092
 0.001092 0.222627 0.775189 0.001092
 0.001092 0.272740 0.598669 0.127499
 0.571082 0.127950 0.001186 0.299781
 0.001092 0.153940 0.812249 0.032719

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZNF644.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZNF644/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	1.57 seconds
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