********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.17 C 0.33 G 0.33 T 0.17 

MOTIF 1-CGCATGCG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 212 P= 3.6e-009
 0.019532 0.979846 0.000465 0.000157
 0.000680 0.000313 0.998850 0.000157
 0.000157 0.998518 0.001168 0.000157
 0.881236 0.085534 0.029870 0.003360
 0.003360 0.029870 0.085534 0.881236
 0.000157 0.001168 0.998518 0.000157
 0.000157 0.998850 0.000313 0.000680
 0.000157 0.000465 0.979846 0.019532

MOTIF 2-CAGCCCCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 1.2e-001
 0.000593 0.909183 0.065447 0.024777
 0.974325 0.001151 0.023931 0.000593
 0.000593 0.001151 0.852401 0.145854
 0.052801 0.763840 0.049598 0.133762
 0.012685 0.799635 0.001151 0.186528
 0.000593 0.847776 0.001151 0.150480
 0.249353 0.748903 0.001151 0.000593
 0.102190 0.029510 0.803837 0.064464

MOTIF 3-CMCRCCCM STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 88 P= 2.7e-001
 0.000499 0.998033 0.000969 0.000499
 0.362429 0.636103 0.000969 0.000499
 0.154141 0.844391 0.000969 0.000499
 0.490251 0.000969 0.508281 0.000499
 0.087756 0.910776 0.000969 0.000499
 0.000499 0.998033 0.000969 0.000499
 0.000499 0.998033 0.000969 0.000499
 0.342892 0.655640 0.000969 0.000499

MOTIF 4-GAGCCGGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 5.0e-001
 0.015099 0.001639 0.982417 0.000845
 0.995877 0.001639 0.001639 0.000845
 0.035279 0.280260 0.649182 0.035279
 0.035279 0.718842 0.001639 0.244239
 0.000845 0.996672 0.001639 0.000845
 0.000845 0.001639 0.996672 0.000845
 0.000845 0.001639 0.996672 0.000845
 0.069936 0.699130 0.230090 0.000845

MOTIF 5-ACTCCGMC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.991577 0.003349 0.003349 0.001725
 0.001725 0.993200 0.003349 0.001725
 0.001725 0.003349 0.144038 0.850888
 0.212758 0.782168 0.003349 0.001725
 0.001725 0.922856 0.073693 0.001725
 0.001725 0.003349 0.993200 0.001725
 0.424017 0.570909 0.003349 0.001725
 0.001725 0.993200 0.003349 0.001725

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZNF639.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZNF639/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c17n09.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.59 seconds
********************************************************************************