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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.313 C 0.187 G 0.187 T 0.313 

MOTIF 1-AAAGAAAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 198 P= 1.3e-002
 0.996772 0.000879 0.000879 0.001471
 0.996772 0.000879 0.000879 0.001471
 0.900711 0.055663 0.000879 0.042748
 0.001471 0.039524 0.768868 0.190137
 0.938709 0.039228 0.000879 0.021184
 0.950716 0.033450 0.000879 0.014954
 0.896727 0.099227 0.000879 0.003168
 0.001471 0.000879 0.996180 0.001471

MOTIF 2-AAGGAAGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 161 P= 4.2e-002
 0.904511 0.031643 0.000831 0.063015
 0.935224 0.000831 0.000831 0.063114
 0.001391 0.000831 0.934763 0.063015
 0.001391 0.017433 0.979784 0.001391
 0.984191 0.000831 0.000831 0.014146
 0.786936 0.093365 0.000831 0.118868
 0.001391 0.093266 0.861239 0.044104
 0.001391 0.000831 0.996386 0.001391

MOTIF 3-GGGAGGGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 70 P= 9.5e-002
 0.000910 0.000544 0.997637 0.000910
 0.000910 0.040968 0.937065 0.021057
 0.000910 0.000544 0.997637 0.000910
 0.998003 0.000544 0.000544 0.000910
 0.000910 0.000544 0.997637 0.000910
 0.000910 0.020691 0.957342 0.021057
 0.000910 0.000544 0.997637 0.000910
 0.998003 0.000544 0.000544 0.000910

MOTIF 4-GAGAGAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 87 P= 2.6e-001
 0.002026 0.001211 0.927427 0.069336
 0.874001 0.001211 0.122763 0.002026
 0.002026 0.001211 0.994737 0.002026
 0.743308 0.001211 0.001211 0.254271
 0.024463 0.001211 0.972300 0.002026
 0.860933 0.001211 0.046084 0.091772
 0.052342 0.001211 0.719911 0.226536
 0.995552 0.001211 0.001211 0.002026

MOTIF 5-GAAAGASA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 216 P= 2.8e-001
 0.000452 0.154568 0.745249 0.099731
 0.727014 0.248062 0.024472 0.000452
 0.738439 0.225181 0.000270 0.036110
 0.687166 0.000270 0.000270 0.312294
 0.010461 0.101150 0.726781 0.161608
 0.696117 0.120558 0.000270 0.183055
 0.000452 0.347435 0.456257 0.195856
 0.716705 0.112239 0.000270 0.170786

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZNF512.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZNF512/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	3.22 seconds
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