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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.242 C 0.258 G 0.258 T 0.242 

MOTIF 1-CTCCGTAS STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 80 P= 2.4e-002
 0.199705 0.621439 0.000527 0.178329
 0.180277 0.199877 0.000527 0.619319
 0.000494 0.984327 0.000527 0.014651
 0.000494 0.998485 0.000527 0.000494
 0.000494 0.000527 0.998485 0.000494
 0.000494 0.000527 0.000527 0.998452
 0.998452 0.000527 0.000527 0.000494
 0.000494 0.404307 0.580548 0.014651

MOTIF 2-AYGGHRGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 62 P= 1.7e-001
 0.997374 0.000894 0.000894 0.000838
 0.000838 0.637216 0.000894 0.361053
 0.000838 0.000894 0.997431 0.000838
 0.000838 0.000894 0.997431 0.000838
 0.437835 0.314800 0.000894 0.246471
 0.480084 0.000894 0.518185 0.000838
 0.000838 0.000894 0.997431 0.000838
 0.000838 0.997431 0.000894 0.000838

MOTIF 3-GGMCAAAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 63 P= 7.0e-001
 0.020118 0.000724 0.978479 0.000678
 0.000678 0.086814 0.911829 0.000678
 0.522169 0.339954 0.020164 0.117713
 0.038613 0.959985 0.000724 0.000678
 0.888846 0.000724 0.109752 0.000678
 0.920051 0.020164 0.059106 0.000678
 0.886063 0.028211 0.076999 0.008726
 0.211573 0.661080 0.000724 0.126623

MOTIF 4-GAGAAAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 8.8e-001
 0.001030 0.001099 0.967312 0.030558
 0.996771 0.001099 0.001099 0.001030
 0.001030 0.263073 0.616661 0.119236
 0.996771 0.001099 0.001099 0.001030
 0.899463 0.039257 0.001099 0.060181
 0.704753 0.030627 0.154871 0.109749
 0.001030 0.161533 0.836406 0.001030
 0.996771 0.001099 0.001099 0.001030

MOTIF 5-CTGTCCCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 9.5e-001
 0.002835 0.991306 0.003024 0.002835
 0.002835 0.139638 0.036648 0.820879
 0.002835 0.003024 0.991306 0.002835
 0.002835 0.003024 0.003024 0.991117
 0.002835 0.991306 0.003024 0.002835
 0.002835 0.910083 0.084248 0.002835
 0.002835 0.991306 0.003024 0.002835
 0.002835 0.828598 0.165733 0.002835

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZNF407.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZNF407/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	3.96 seconds
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