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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.21 C 0.29 G 0.29 T 0.21 

MOTIF 1-GATAAGAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 3.3e-001
 0.002235 0.003076 0.992455 0.002235
 0.917998 0.003076 0.076691 0.002235
 0.002235 0.003076 0.003076 0.991614
 0.917998 0.003076 0.003076 0.075850
 0.813671 0.033550 0.150544 0.002235
 0.002235 0.150544 0.844987 0.002235
 0.991614 0.003076 0.003076 0.002235
 0.075850 0.076691 0.771608 0.075850

MOTIF 2-GTGACTCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 5.0e-001
 0.238192 0.001400 0.759391 0.001017
 0.001017 0.001400 0.001400 0.996184
 0.034517 0.062348 0.902118 0.001017
 0.996184 0.001400 0.001400 0.001017
 0.001017 0.962684 0.035282 0.001017
 0.001017 0.015268 0.034900 0.948816
 0.068125 0.909184 0.007807 0.014885
 0.875822 0.121761 0.001400 0.001017

MOTIF 3-AGATGGAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 7.6e-001
 0.952758 0.023282 0.023282 0.000678
 0.178999 0.010185 0.810137 0.000678
 0.975106 0.000934 0.023282 0.000678
 0.045446 0.077229 0.056999 0.820326
 0.000678 0.135094 0.841201 0.023026
 0.000678 0.152973 0.814071 0.032278
 0.727233 0.000934 0.181763 0.090070
 0.045374 0.099649 0.820776 0.034200

MOTIF 4-CACGTGCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.002222 0.992498 0.003058 0.002222
 0.845035 0.003058 0.003058 0.148849
 0.002222 0.992498 0.003058 0.002222
 0.002222 0.003058 0.992498 0.002222
 0.002222 0.003058 0.003058 0.991662
 0.002222 0.149685 0.772675 0.075418
 0.002222 0.809273 0.039656 0.148849
 0.148849 0.076254 0.699361 0.075535

MOTIF 5-CTGGGTGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.104733 0.788548 0.053654 0.053065
 0.001563 0.105321 0.002152 0.890963
 0.001563 0.002152 0.984871 0.011414
 0.001563 0.105321 0.891552 0.001563
 0.001563 0.002152 0.943220 0.053065
 0.001563 0.002152 0.002152 0.994133
 0.104733 0.002152 0.840050 0.053065
 0.994133 0.002152 0.002152 0.001563

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZNF395.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZNF395/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n11.farnam.hpc.yale.internal
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FINALTIME:	1.37 seconds
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