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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.297 C 0.203 G 0.203 T 0.297 

MOTIF 1-AGRKGGCR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 149 P= 3.6e-003
 0.989138 0.000289 0.000289 0.010283
 0.000422 0.010150 0.989005 0.000422
 0.505066 0.010150 0.474500 0.010283
 0.050048 0.029872 0.575285 0.344795
 0.000422 0.000289 0.998866 0.000422
 0.000422 0.002175 0.930653 0.066749
 0.138740 0.829384 0.021593 0.010283
 0.554836 0.000289 0.444452 0.000422

MOTIF 2-AAAAAAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 240 P= 1.1e-002
 0.993943 0.001750 0.001750 0.002556
 0.993943 0.001750 0.001750 0.002556
 0.990085 0.001750 0.001750 0.006415
 0.992774 0.001750 0.001750 0.003726
 0.993608 0.001750 0.001750 0.002891
 0.993935 0.001750 0.001750 0.002565
 0.993943 0.001750 0.001750 0.002556
 0.993943 0.001750 0.001750 0.002556

MOTIF 3-GCAACTTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.2e-001
 0.047041 0.046432 0.904596 0.001932
 0.092295 0.904451 0.001322 0.001932
 0.905060 0.001322 0.001322 0.092295
 0.950314 0.001322 0.046432 0.001932
 0.092295 0.859342 0.046432 0.001932
 0.047041 0.227377 0.091541 0.634041
 0.001932 0.001322 0.091541 0.905205
 0.137332 0.859414 0.001322 0.001932

MOTIF 4-GTGRYCAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 151 P= 2.0e-001
 0.292135 0.000257 0.707232 0.000376
 0.226452 0.098834 0.000257 0.674456
 0.162712 0.000257 0.652702 0.184329
 0.287209 0.000257 0.516560 0.195973
 0.195973 0.516560 0.000257 0.287209
 0.184329 0.652702 0.000257 0.162712
 0.674456 0.000257 0.098834 0.226452
 0.000376 0.707232 0.000257 0.292135

MOTIF 5-TCTCAAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 2.3e-001
 0.002064 0.001413 0.001413 0.995110
 0.002064 0.994459 0.001413 0.002064
 0.002064 0.001413 0.001413 0.995110
 0.002064 0.994459 0.001413 0.002064
 0.995110 0.001413 0.001413 0.002064
 0.817469 0.097977 0.082490 0.002064
 0.850497 0.049617 0.049617 0.050268
 0.802138 0.049617 0.097977 0.050268

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZNF384.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZNF384/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	3.90 seconds
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