********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.291 C 0.209 G 0.209 T 0.291 

MOTIF 1-TCAYRTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 73 P= 5.0e-001
 0.000744 0.061343 0.000533 0.937380
 0.000744 0.997978 0.000533 0.000744
 0.989335 0.000533 0.009387 0.000744
 0.027393 0.615343 0.000533 0.356730
 0.356730 0.000533 0.615343 0.027393
 0.000744 0.009387 0.000533 0.989335
 0.000744 0.000533 0.997978 0.000744
 0.937380 0.000533 0.061343 0.000744

MOTIF 2-AGTGGKGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.6e-001
 0.710722 0.224119 0.063597 0.001562
 0.001562 0.001118 0.995759 0.001562
 0.001562 0.001118 0.001118 0.996202
 0.001562 0.001118 0.995759 0.001562
 0.001562 0.300102 0.696775 0.001562
 0.001562 0.038265 0.435906 0.524267
 0.001562 0.001118 0.995759 0.001562
 0.188017 0.001118 0.660597 0.150269

MOTIF 3-CAAAGGCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 53 P= 8.8e-001
 0.000874 0.997627 0.000626 0.000874
 0.572084 0.050868 0.104621 0.272427
 0.653036 0.063050 0.178709 0.105205
 0.935518 0.021411 0.021411 0.021660
 0.042512 0.125407 0.831207 0.000874
 0.000874 0.062666 0.920807 0.015654
 0.042512 0.806245 0.067159 0.084084
 0.893880 0.063050 0.000626 0.042445

MOTIF 4-CCAGCTAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.001875 0.950300 0.001342 0.046482
 0.046482 0.905693 0.001342 0.046482
 0.995440 0.001342 0.001342 0.001875
 0.046482 0.001342 0.950300 0.001875
 0.091232 0.897018 0.009874 0.001875
 0.136127 0.001342 0.001342 0.861188
 0.816364 0.001342 0.135811 0.046482
 0.091377 0.860799 0.001342 0.046482

MOTIF 5-AGGCTGGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.995398 0.001355 0.001355 0.001893
 0.001893 0.001355 0.949771 0.046982
 0.046909 0.001355 0.949843 0.001893
 0.182105 0.769631 0.001355 0.046909
 0.001893 0.001355 0.001355 0.995398
 0.091926 0.001355 0.904826 0.001893
 0.001893 0.001355 0.724324 0.272428
 0.679700 0.001355 0.001355 0.317591

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZNF354B.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZNF354B/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n11.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.71 seconds
********************************************************************************