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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.324 C 0.176 G 0.176 T 0.324 

MOTIF 1-CCTGGGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 9.5e-002
 0.001966 0.910728 0.043206 0.044099
 0.001966 0.952861 0.001073 0.044099
 0.086368 0.043206 0.001073 0.869353
 0.001966 0.001073 0.910593 0.086368
 0.110282 0.001073 0.844546 0.044099
 0.044099 0.001073 0.910728 0.044099
 0.827220 0.001073 0.085474 0.086232
 0.784952 0.043206 0.085474 0.086368

MOTIF 2-CATTTATT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 2.4e-001
 0.001383 0.873932 0.000755 0.123931
 0.997108 0.000755 0.000755 0.001383
 0.001383 0.050599 0.105873 0.842146
 0.096614 0.173349 0.000755 0.729282
 0.001383 0.050146 0.000755 0.947716
 0.814414 0.000755 0.183448 0.001383
 0.001383 0.158098 0.030389 0.810130
 0.066511 0.033984 0.060119 0.839386

MOTIF 3-GGAGTTAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 7.6e-001
 0.003539 0.001931 0.990990 0.003539
 0.003539 0.001931 0.990990 0.003539
 0.840682 0.001931 0.001931 0.155456
 0.003539 0.001931 0.990990 0.003539
 0.003539 0.001931 0.001931 0.992599
 0.079376 0.001931 0.001931 0.916762
 0.992599 0.001931 0.001931 0.003539
 0.155456 0.077767 0.153848 0.612929

MOTIF 4-TAAACTCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 8.8e-001
 0.003067 0.001674 0.001674 0.993586
 0.862141 0.067396 0.001674 0.068790
 0.796208 0.001674 0.133329 0.068790
 0.729423 0.001674 0.001674 0.267230
 0.003067 0.992192 0.001674 0.003067
 0.003067 0.001674 0.001674 0.993586
 0.003067 0.992192 0.001674 0.003067
 0.993586 0.001674 0.001674 0.003067

MOTIF 5-AACTTTGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.781922 0.001787 0.001787 0.214504
 0.993150 0.001787 0.001787 0.003276
 0.003276 0.991662 0.001787 0.003276
 0.003276 0.001787 0.001787 0.993150
 0.003276 0.001787 0.001787 0.993150
 0.003276 0.071970 0.001787 0.922967
 0.003276 0.001787 0.991662 0.003276
 0.143867 0.001787 0.001787 0.852558

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZNF318.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZNF318/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.62 seconds
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