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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.263 C 0.237 G 0.237 T 0.263 

MOTIF 1-CTGCCCTC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 211 P= 4.8e-006
 0.000201 0.941709 0.000181 0.057909
 0.000688 0.000181 0.000181 0.998949
 0.009120 0.003397 0.983746 0.003736
 0.013065 0.895367 0.011274 0.080294
 0.003058 0.989523 0.000181 0.007237
 0.000201 0.924241 0.000181 0.075377
 0.018028 0.000181 0.000181 0.981609
 0.000201 0.998629 0.000181 0.000989

MOTIF 2-GAMTGTAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 181 P= 1.7e-005
 0.024315 0.000258 0.975141 0.000286
 0.999197 0.000258 0.000258 0.000286
 0.333932 0.513066 0.063040 0.089962
 0.040751 0.000258 0.000258 0.958732
 0.213971 0.015361 0.770382 0.000286
 0.030363 0.117808 0.193816 0.658013
 0.999197 0.000258 0.000258 0.000286
 0.999197 0.000258 0.000258 0.000286

MOTIF 3-AGCACCTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 1.7e-001
 0.981223 0.001234 0.016174 0.001369
 0.037458 0.037324 0.923850 0.001369
 0.073663 0.670062 0.146290 0.109985
 0.996162 0.001234 0.001234 0.001369
 0.109985 0.778620 0.001234 0.110161
 0.001369 0.923734 0.001234 0.073663
 0.001369 0.001234 0.001234 0.996162
 0.996162 0.001234 0.001234 0.001369

MOTIF 4-TGAACAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 74 P= 2.1e-001
 0.033928 0.020402 0.056162 0.889508
 0.082145 0.079647 0.805793 0.032415
 0.930554 0.020402 0.028568 0.020475
 0.737492 0.040129 0.069961 0.152418
 0.046987 0.894871 0.020402 0.037740
 0.772642 0.079615 0.079583 0.068160
 0.958448 0.020402 0.020402 0.000748
 0.898404 0.000675 0.100173 0.000748

MOTIF 5-AGCTCCCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 2.4e-001
 0.956854 0.040333 0.001334 0.001479
 0.040541 0.001334 0.956646 0.001479
 0.001479 0.995708 0.001334 0.001479
 0.017623 0.001334 0.040333 0.940710
 0.001479 0.995708 0.001334 0.001479
 0.017623 0.979563 0.001334 0.001479
 0.293419 0.703767 0.001334 0.001479
 0.001479 0.001334 0.118331 0.878856

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZNF316.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZNF316/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	3.61 seconds
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