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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.171 C 0.33 G 0.33 T 0.171 

MOTIF 1-GTGCGGGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 155 P= 2.1e-002
 0.006476 0.000702 0.992459 0.000363
 0.104930 0.121796 0.101248 0.672026
 0.000363 0.009641 0.974866 0.015130
 0.015130 0.765548 0.036523 0.182799
 0.006540 0.000702 0.962814 0.029944
 0.000363 0.015468 0.983805 0.000363
 0.001024 0.000702 0.997910 0.000363
 0.814525 0.060272 0.020295 0.104908

MOTIF 2-CCCTCCCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 61 P= 4.9e-002
 0.015500 0.939045 0.029955 0.015500
 0.015500 0.939045 0.029955 0.015500
 0.015500 0.939045 0.029955 0.015500
 0.015500 0.029955 0.029955 0.924591
 0.015500 0.939045 0.029955 0.015500
 0.015500 0.939045 0.029955 0.015500
 0.015500 0.939045 0.029955 0.015500
 0.015500 0.939045 0.029955 0.015500

MOTIF 3-AGGTGACG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 2.4e-001
 0.940458 0.002528 0.055706 0.001308
 0.054486 0.002528 0.919664 0.023322
 0.001308 0.002528 0.994856 0.001308
 0.107835 0.002528 0.031181 0.858456
 0.001308 0.002528 0.994856 0.001308
 0.851016 0.055706 0.091970 0.001308
 0.054486 0.888500 0.002528 0.054486
 0.161356 0.055706 0.675103 0.107835

MOTIF 4-CTTCCTCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 7.6e-001
 0.015500 0.939045 0.029955 0.015500
 0.015500 0.029955 0.029955 0.924591
 0.015500 0.029955 0.029955 0.924591
 0.015500 0.939045 0.029955 0.015500
 0.015500 0.939045 0.029955 0.015500
 0.015500 0.029955 0.029955 0.924591
 0.015500 0.939045 0.029955 0.015500
 0.015500 0.939045 0.029955 0.015500

MOTIF 5-ATAGATRM STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.795590 0.151213 0.051977 0.001221
 0.050839 0.002359 0.002359 0.944444
 0.944444 0.002359 0.051977 0.001221
 0.050839 0.101595 0.747110 0.100457
 0.845208 0.101595 0.051977 0.001221
 0.001221 0.051977 0.002359 0.944444
 0.398645 0.002359 0.548158 0.050839
 0.299409 0.548158 0.101595 0.050839

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZNF282.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZNF282/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n10.farnam.hpc.yale.internal
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FINALTIME:	4.15 seconds
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