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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.304 C 0.196 G 0.196 T 0.304 

MOTIF 1-CTGCAGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 85 P= 8.2e-004
 0.000786 0.997922 0.000507 0.000786
 0.000786 0.000507 0.000507 0.998201
 0.149873 0.032847 0.816495 0.000786
 0.121023 0.820109 0.058082 0.000786
 0.998201 0.000507 0.000507 0.000786
 0.000786 0.163097 0.835332 0.000786
 0.793464 0.047403 0.000507 0.158626
 0.998201 0.000507 0.000507 0.000786

MOTIF 2-GCTGTTGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 9.5e-002
 0.027627 0.017827 0.926918 0.027627
 0.027627 0.926918 0.017827 0.027627
 0.027627 0.017827 0.017827 0.936718
 0.027627 0.017827 0.926918 0.027627
 0.027627 0.017827 0.017827 0.936718
 0.027627 0.017827 0.017827 0.936718
 0.027627 0.017827 0.926918 0.027627
 0.936718 0.017827 0.017827 0.027627

MOTIF 3-AGCAAGGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 1.2e-001
 0.997348 0.000747 0.000747 0.001158
 0.001158 0.000747 0.996938 0.001158
 0.001158 0.996938 0.000747 0.001158
 0.997348 0.000747 0.000747 0.001158
 0.997348 0.000747 0.000747 0.001158
 0.001158 0.000747 0.996938 0.001158
 0.001158 0.000747 0.890816 0.107280
 0.001158 0.996938 0.000747 0.001158

MOTIF 4-GCAGAAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 2.4e-001
 0.001757 0.001134 0.995352 0.001757
 0.001757 0.927950 0.001134 0.069160
 0.928573 0.001134 0.001134 0.069160
 0.001757 0.001134 0.834278 0.162831
 0.975938 0.001134 0.001134 0.021794
 0.979386 0.001134 0.001134 0.018346
 0.001757 0.001134 0.955278 0.041831
 0.939356 0.001134 0.001134 0.058377

MOTIF 5-CYAGGGCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.001723 0.995443 0.001112 0.001723
 0.001723 0.637155 0.001112 0.360010
 0.996054 0.001112 0.001112 0.001723
 0.001723 0.001112 0.995443 0.001723
 0.001723 0.001112 0.995443 0.001723
 0.001723 0.001112 0.995443 0.001723
 0.001723 0.995443 0.001112 0.001723
 0.718297 0.001112 0.278868 0.001723

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZNF280A.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZNF280A/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n01.farnam.hpc.yale.internal
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FINALTIME:	1.51 seconds
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