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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.184 C 0.316 G 0.316 T 0.184 

MOTIF 1-GGGAGCAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 182 P= 3.5e-005
 0.106895 0.000492 0.822581 0.070033
 0.000288 0.004966 0.994459 0.000288
 0.000288 0.000492 0.998933 0.000288
 0.998728 0.000492 0.000492 0.000288
 0.000288 0.000492 0.980310 0.018910
 0.000288 0.728312 0.271113 0.000288
 0.998728 0.000492 0.000492 0.000288
 0.000288 0.998933 0.000492 0.000288

MOTIF 2-CTCCTCCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 84 P= 5.0e-001
 0.001445 0.994639 0.002471 0.001445
 0.001445 0.002471 0.002471 0.993614
 0.110011 0.886073 0.002471 0.001445
 0.001445 0.831790 0.165320 0.001445
 0.001445 0.002471 0.002471 0.993614
 0.055728 0.940356 0.002471 0.001445
 0.001445 0.994639 0.002471 0.001445
 0.001445 0.994639 0.002471 0.001445

MOTIF 3-CTCATCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 7.6e-001
 0.016773 0.937773 0.028682 0.016773
 0.016773 0.028682 0.028682 0.925864
 0.016773 0.937773 0.028682 0.016773
 0.925864 0.028682 0.028682 0.016773
 0.016773 0.028682 0.028682 0.925864
 0.016773 0.937773 0.028682 0.016773
 0.016773 0.937773 0.028682 0.016773
 0.016773 0.937773 0.028682 0.016773

MOTIF 4-GCCCAGCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 9.7e-001
 0.017547 0.001813 0.979580 0.001060
 0.008678 0.844676 0.145586 0.001060
 0.001060 0.996067 0.001813 0.001060
 0.040887 0.819802 0.098425 0.040887
 0.954449 0.036124 0.008367 0.001060
 0.040887 0.050119 0.787876 0.121119
 0.047209 0.802982 0.108923 0.040887
 0.001060 0.996067 0.001813 0.001060

MOTIF 5-ATGGGCCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.810074 0.004076 0.004076 0.181774
 0.002384 0.004076 0.004076 0.989464
 0.002384 0.093627 0.901606 0.002384
 0.002384 0.004076 0.991157 0.002384
 0.091935 0.093627 0.812055 0.002384
 0.002384 0.721638 0.273595 0.002384
 0.002384 0.991157 0.004076 0.002384
 0.989464 0.004076 0.004076 0.002384

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZNF263.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZNF263/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n09.farnam.hpc.yale.internal
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FINALTIME:	1.47 seconds
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