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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.221 C 0.279 G 0.279 T 0.221 

MOTIF 1-CCCGCCCT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 3.0e-001
 0.001514 0.995060 0.001912 0.001514
 0.001514 0.899923 0.001912 0.096651
 0.240513 0.756062 0.001912 0.001514
 0.001514 0.001912 0.790299 0.206275
 0.027103 0.969471 0.001912 0.001514
 0.192403 0.804171 0.001912 0.001514
 0.001514 0.995060 0.001912 0.001514
 0.001514 0.001912 0.001912 0.994663

MOTIF 2-CAGCACCM STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 3.0e-001
 0.002082 0.993206 0.002629 0.002082
 0.992660 0.002629 0.002629 0.002082
 0.002082 0.002629 0.993206 0.002082
 0.002082 0.993206 0.002629 0.002082
 0.992660 0.002629 0.002629 0.002082
 0.002082 0.993206 0.002629 0.002082
 0.002082 0.993206 0.002629 0.002082
 0.597594 0.397694 0.002629 0.002082

MOTIF 3-CCCCGCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 5.0e-001
 0.020091 0.934455 0.025364 0.020091
 0.020091 0.934455 0.025364 0.020091
 0.020091 0.934455 0.025364 0.020091
 0.020091 0.934455 0.025364 0.020091
 0.020091 0.025364 0.934455 0.020091
 0.020091 0.934455 0.025364 0.020091
 0.020091 0.934455 0.025364 0.020091
 0.020091 0.934455 0.025364 0.020091

MOTIF 4-AGCAATGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.956567 0.001572 0.001572 0.040290
 0.040353 0.079787 0.878616 0.001245
 0.079335 0.878804 0.001572 0.040290
 0.917522 0.040616 0.001572 0.040290
 0.995612 0.001572 0.001572 0.001245
 0.001245 0.291049 0.001572 0.706134
 0.001245 0.291552 0.705958 0.001245
 0.587358 0.158129 0.253269 0.001245

MOTIF 5-AAATAAAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.857554 0.118705 0.022502 0.001239
 0.957761 0.001564 0.023350 0.017325
 0.976203 0.001564 0.020993 0.001239
 0.001239 0.061600 0.001564 0.935597
 0.761602 0.079406 0.157752 0.001239
 0.745643 0.118516 0.017650 0.118191
 0.839571 0.118705 0.040485 0.001239
 0.001239 0.040423 0.001564 0.956774

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZNF197.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZNF197/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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