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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.262 C 0.238 G 0.238 T 0.262 

MOTIF 1-CTGTATAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 200 P= 4.8e-006
 0.009146 0.962401 0.010686 0.017767
 0.000330 0.012618 0.017738 0.969314
 0.026552 0.026465 0.946653 0.000330
 0.009043 0.024536 0.020326 0.946095
 0.874081 0.013760 0.076502 0.035657
 0.000330 0.000299 0.003905 0.995466
 0.766017 0.003815 0.210909 0.019259
 0.003846 0.986813 0.000299 0.009043

MOTIF 2-AGCACCTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 150 P= 1.8e-003
 0.854712 0.000306 0.133829 0.011154
 0.018187 0.000306 0.981170 0.000338
 0.000338 0.977435 0.000306 0.021922
 0.803149 0.019904 0.143688 0.033258
 0.000338 0.882541 0.000306 0.116816
 0.018230 0.767479 0.000306 0.213985
 0.021240 0.010639 0.027073 0.941048
 0.822826 0.000306 0.167613 0.009255

MOTIF 3-AATAAATG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 101 P= 3.1e-002
 0.947459 0.051387 0.000548 0.000605
 0.954756 0.016539 0.000548 0.028157
 0.016622 0.041657 0.016539 0.925183
 0.927609 0.023158 0.016594 0.032638
 0.868274 0.130573 0.000548 0.000605
 0.893305 0.048752 0.025253 0.032690
 0.039396 0.032529 0.000548 0.927527
 0.023198 0.016539 0.948998 0.011266

MOTIF 4-CTTATCTT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 2.4e-001
 0.111742 0.884309 0.001877 0.002073
 0.056819 0.056623 0.001877 0.884681
 0.094153 0.056623 0.001877 0.847347
 0.994174 0.001877 0.001877 0.002073
 0.024736 0.001877 0.056623 0.916764
 0.002073 0.993978 0.001877 0.002073
 0.056819 0.001877 0.056623 0.884681
 0.166842 0.111546 0.001877 0.719735

MOTIF 5-ACCCCAGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 5.0e-001
 0.841956 0.001739 0.001739 0.154567
 0.001920 0.858017 0.001739 0.138324
 0.052639 0.943703 0.001739 0.001920
 0.103521 0.892821 0.001739 0.001920
 0.001920 0.994421 0.001739 0.001920
 0.943884 0.052457 0.001739 0.001920
 0.052639 0.001739 0.943703 0.001920
 0.022916 0.799783 0.022734 0.154567

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZKSCAN8.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZKSCAN8/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.79 seconds
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