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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.239 C 0.261 G 0.261 T 0.239 

MOTIF 1-ACAGGTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 158 P= 2.0e-003
 0.723449 0.115961 0.086454 0.074137
 0.035791 0.954531 0.000899 0.008779
 0.915615 0.000899 0.024766 0.058720
 0.000823 0.041042 0.957312 0.000823
 0.000823 0.024766 0.971397 0.003015
 0.001417 0.000899 0.012832 0.984852
 0.180671 0.037773 0.770853 0.010703
 0.792586 0.003920 0.024978 0.178516

MOTIF 2-AAGATAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 67 P= 2.5e-002
 0.660693 0.001021 0.113155 0.225131
 0.997023 0.001021 0.001021 0.000935
 0.000935 0.028138 0.942876 0.028051
 0.969906 0.028138 0.001021 0.000935
 0.055255 0.012246 0.001021 0.931477
 0.915586 0.001021 0.028138 0.055255
 0.955128 0.001021 0.042916 0.000935
 0.165222 0.066801 0.739926 0.028051

MOTIF 3-ATGASTCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 56 P= 9.5e-002
 0.714091 0.028276 0.237950 0.019682
 0.000654 0.000714 0.000714 0.997918
 0.019621 0.000714 0.979011 0.000654
 0.997918 0.000714 0.000714 0.000654
 0.057923 0.549920 0.372474 0.019682
 0.057831 0.000714 0.000714 0.940741
 0.057646 0.940986 0.000714 0.000654
 0.978951 0.019681 0.000714 0.000654

MOTIF 4-CCAGGTAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 73 P= 6.5e-001
 0.000666 0.792036 0.189981 0.017316
 0.047381 0.882291 0.039380 0.030947
 0.885246 0.055381 0.000728 0.058645
 0.097391 0.039442 0.699516 0.163651
 0.029656 0.000728 0.930298 0.039319
 0.126515 0.000728 0.000728 0.872029
 0.951038 0.008728 0.000728 0.039506
 0.019993 0.164134 0.588067 0.227806

MOTIF 5-CCGCCCCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.001584 0.995102 0.001730 0.001584
 0.001584 0.665008 0.146856 0.186552
 0.001584 0.047674 0.949157 0.001584
 0.001584 0.903213 0.001730 0.093473
 0.001584 0.976082 0.001730 0.020604
 0.047529 0.673343 0.185655 0.093473
 0.001584 0.995102 0.001730 0.001584
 0.192876 0.186175 0.619364 0.001584

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZEB2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZEB2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n01.farnam.hpc.yale.internal
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FINALTIME:	1.48 seconds
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