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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.296 C 0.204 G 0.204 T 0.296 

MOTIF 1-AAATAAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 119 P= 7.0e-002
 0.935964 0.018582 0.018582 0.026873
 0.935964 0.018582 0.018582 0.026873
 0.935964 0.018582 0.018582 0.026873
 0.026873 0.018582 0.018582 0.935964
 0.935964 0.018582 0.018582 0.026873
 0.935964 0.018582 0.018582 0.026873
 0.935964 0.018582 0.018582 0.026873
 0.026873 0.018582 0.018582 0.935964

MOTIF 2-ACTCCAGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 1.2e-001
 0.899691 0.021871 0.013488 0.064950
 0.004970 0.982051 0.000626 0.012353
 0.004970 0.043185 0.064430 0.887416
 0.043464 0.784426 0.086018 0.086091
 0.064846 0.869886 0.021871 0.043396
 0.870166 0.000626 0.085812 0.043396
 0.043396 0.000626 0.719859 0.236118
 0.022151 0.933827 0.000626 0.043396

MOTIF 3-CAAGWTGS STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 88 P= 3.5e-001
 0.000456 0.736111 0.262978 0.000456
 0.701132 0.000315 0.036786 0.261767
 0.998914 0.000315 0.000315 0.000456
 0.000456 0.287571 0.711518 0.000456
 0.496927 0.165119 0.000315 0.337639
 0.114639 0.000315 0.229578 0.655468
 0.000456 0.068852 0.741086 0.189606
 0.029107 0.605073 0.354682 0.011138

MOTIF 4-AGYGAGAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 5.0e-001
 0.996306 0.001072 0.001072 0.001550
 0.135384 0.001072 0.768549 0.094995
 0.001550 0.440202 0.001072 0.557176
 0.257760 0.001072 0.739618 0.001550
 0.959957 0.037421 0.001072 0.001550
 0.001550 0.037421 0.813968 0.147062
 0.996306 0.001072 0.001072 0.001550
 0.001550 0.995828 0.001072 0.001550

MOTIF 5-CTGGGTTC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.064325 0.869531 0.001819 0.064325
 0.002631 0.001819 0.001819 0.993730
 0.126217 0.125406 0.745746 0.002631
 0.002631 0.001819 0.992919 0.002631
 0.002631 0.001819 0.992919 0.002631
 0.188309 0.001819 0.001819 0.808052
 0.064325 0.001819 0.001819 0.932037
 0.002631 0.992919 0.001819 0.002631

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZC3H11A.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZC3H11A/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n06.farnam.hpc.yale.internal
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FINALTIME:	1.56 seconds
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